Gene Selkov, Jr. / Finnigan

Modules

Finnigan	Thermo/Finnigan mass spec data decoder	0.0206
Finnigan::AuditTag	a decoder for AuditTag, a substructure found in the Finnigan file headers	0.0206
Finnigan::CASInfo	a decoder for autosampler data	0.0206
Finnigan::CASInfoPreamble	a decoder for CASInfoPreamble, a numeric autosampler descriptor	0.0206
Finnigan::Decoder	a generic binary structure decoder	0.0206
Finnigan::Error	a decoder for Error, an error log record	0.0206
Finnigan::FileHeader	a decoder for Finnigan file headers	0.0206
Finnigan::FractionCollector	a decoder for FractionCollector, a mass range object in ScanEvent	0.0206
Finnigan::GenericDataDescriptor	a decoder for GenericDataDescriptor, a key to decoding GenericRecord fields	0.0206
Finnigan::GenericDataHeader	a decoder for GenericDataHeader -- a key to decoding generic data records	0.0206
Finnigan::GenericRecord	a decoder for data structures defined by GenericDataHeader	0.0206
Finnigan::InjectionData	a decoder for the injection parameters in a sequence table row	0.0206
Finnigan::InstID	a decoder for InstID, a set of instrument identifiers	0.0206
Finnigan::InstrumentLogRecord	a decoder for a single Instrument Log record	0.0206
Finnigan::MethodFile	a decoder for the outer MethodFile container	0.0206
Finnigan::OLE2DIF	a decoder for Double-Indirect FAT, a block allocation structure in Microsoft OLE2	0.0206
Finnigan::OLE2DirectoryEntry	a decoder for the Microsoft OLE2 directory entry	0.0206
Finnigan::OLE2FAT	a decoder for FAT Sector, a block allocation structure in OLE2	0.0206
Finnigan::OLE2File	a decoder for Microsoft structured data files (OLE2 a.k.a. CDF)	0.0206
Finnigan::OLE2Header	a decoder for the Microsoft OLE2 header structure	0.0206
Finnigan::OLE2Property	a decoder for the Property structure in Microsoft OLE2	0.0206
Finnigan::PacketHeader	a decoder for PacketHeader, a substructure of ScanDataPaket	0.0206
Finnigan::Peak	a full-featured decoder for a single (M/z, abundance) pair, an element of the PeakList structure	0.0206
Finnigan::Peaks	a decoder for PeaksList, the list of peak centroids	0.0206
Finnigan::Profile	a full-featured decoder for Finnigan scan profiles	0.0206
Finnigan::ProfileChunk	a full-featured decoder for a single ProfileChunk structure	0.0206
Finnigan::RawFileInfo	a decoder for RawFileInfo, the primary index structure	0.0206
Finnigan::RawFileInfoPreamble	a decoder for RawFileInfoPreamble, the binary data part of RawFileInfo	0.0206
Finnigan::Reaction	a decoder for Reaction, the container for precursor mass and fragmentation energy	0.0206
Finnigan::RunHeader	a decoder for RunHeader, the primary file index structure	0.0206
Finnigan::SampleInfo	a decoder for SampleInfo, the primary file index structure	0.0206
Finnigan::Scan	a lightweight scan data decoder	0.0206
Finnigan::ScanEvent	a decoder for ScanEvent, a detailed scan descriptor	0.0206
Finnigan::ScanEventPreamble	a decoder for ScanEventPreamble, the byte array component of ScanEvent	0.0206
Finnigan::ScanEventTemplate	a decoder for ScanEventTemplate, the prototype scan descriptor	0.0206
Finnigan::ScanIndexEntry	a decoder for ScanIndexEntry, a linked list element pointing to scan data	0.0206
Finnigan::ScanParameters	a decoder for ScanParameters, a GenericRecord containing various scan meta-data.	0.0206
Finnigan::SeqRow	a decoder for one row of the sequencer table	0.0206

Documentation

mzxml-unpack	decode the base64-encoded scan data in an mzXML or mzML file
uf-casinfo	decode the CASInfo structure in a Finnigan raw file
uf-error	print the error log entries from a Finnigan raw file
uf-header	decode the file header in a Finnigan raw file
uf-index	examine the ScanIndexEntry structures in a Finnigan raw file
uf-instrument	print or dump the instrument IDs found a Finnigan raw file
uf-log	list or dump the instrument log entries in a Finnigan raw file
uf-meth	decode the embedded method file in a Finnigan raw file
uf-mzml	convert a Finnigan raw file to mzML
uf-mzxml	convert a Finnigan raw file to mzXML
uf-params	list or dump the ScanParameters records in a Finnigan raw file
uf-rfi	decode the RawFileInfo structure in a Finnigan raw file
uf-runheader	decode the RunHeader structure in a Finnigan raw file
uf-scan	examine scan data in a single MS scan
uf-scan-light	list the profile or centroids in a single MS scan
uf-segments	dump the scan event hirerarchy of a Finnigan raw file
uf-seqrow	decode the SeqRow structure in a Finnigan raw file
uf-trailer	examine the ScanEvent structures in a Finnigan raw file "trailer"
uf-tune	list or dump the instrument settings and calibration data from a Finnigan raw file