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Timothy Parnell > Bio-ToolBox-1.51

Bio-ToolBox-1.51

This Release Bio-ToolBox-1.51  [Download] [Browse 12 Jul 2017
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Repository https://github.com/tjparnell/biotoolbox
CPAN Testers PASS (390)   FAIL (17)   [ View Reports ] [ Perl/Platform Version Matrix ]
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License The Perl 5 License (Artistic 1 & GPL 1)
Special Files
Build.PL
CHANGES
LICENSE
MANIFEST
META.json
README

Modules

Bio::ToolBox Tools for querying and analysis of genomic data     1.51
Bio::ToolBox::Data Reading, writing, and manipulating data structure     1.43
Bio::ToolBox::Data::Feature Objects representing rows in a data table     1.51
Bio::ToolBox::Data::Iterator      
Bio::ToolBox::Data::Stream Read, Write, and Manipulate Data File Line by Line     1.41
Bio::ToolBox::Data::core Common functions to Bio:ToolBox::Data family     1.51
Bio::ToolBox::Data::file File functions to Bio:ToolBox::Data family     1.51
Bio::ToolBox::GeneTools SeqFeature agnostic methods for working with gene models     1.44
Bio::ToolBox::SeqFeature Fast, simple SeqFeature implementation     1.44
Bio::ToolBox::big_helper     1.45
Bio::ToolBox::db_helper helper interface to various database formats     1.51
Bio::ToolBox::db_helper::alignment_callbacks     1.51
Bio::ToolBox::db_helper::bam     1.51
Bio::ToolBox::db_helper::bigbed     1.51
Bio::ToolBox::db_helper::bigwig     1.51
Bio::ToolBox::db_helper::config     1.14
Bio::ToolBox::db_helper::constants      
Bio::ToolBox::db_helper::hts     1.51
Bio::ToolBox::db_helper::seqfasta     1.51
Bio::ToolBox::db_helper::useq     1.51
Bio::ToolBox::db_helper::wiggle     1.51
Bio::ToolBox::parser::gff parse GFF3, GTF, and GFF files     1.44
Bio::ToolBox::parser::ucsc Parser for UCSC genePred, refFlat, etc formats     1.42
Bio::ToolBox::parser::ucsc::builder      
Bio::ToolBox::utility common utility functions for Bio::ToolBox     1.36

Documentation

bam2wig.pl  
data2bed.pl  
data2fasta.pl  
data2gff.pl  
data2wig.pl  
db_setup.pl  
db_types.pl  
get_binned_data.pl  
get_datasets.pl  
get_feature_info.pl  
get_features.pl  
get_gene_regions.pl  
get_intersecting_features.pl  
get_relative_data.pl  
join_data_file.pl  
manipulate_datasets.pl  
merge_datasets.pl  
pull_features.pl  
split_data_file.pl  
ucsc_table2gff3.pl