db_types.pl
A script to print out the available feature types in a database.
db_types.pl <database>
Options: --db <database> --version --help
The command line flags and descriptions:
Specify the name of a Bio::DB::SeqFeature::Store annotation database from which gene or feature annotation may be derived. If not specified, then a list of known databases in the BioToolBox configuration file .biotoolbox.cfg will be presented as a list to the user.
Bio::DB::SeqFeature::Store
For more information about using annotation databases, see https://code.google.com/p/biotoolbox/wiki/WorkingWithDatabases.
Print the version number.
Display this POD documentation.
This program will print a list of all of the known feature types present in a Bio::DB::SeqFeature::Store database. The types are organized into groups by their source tag.
BigWigSet databases, comprised of a directory of BigWig files and a metadata file, are also supported.
Timothy J. Parnell, PhD Howard Hughes Medical Institute Dept of Oncological Sciences Huntsman Cancer Institute University of Utah Salt Lake City, UT, 84112
This package is free software; you can redistribute it and/or modify it under the terms of the Artistic License 2.0.
To install Bio::ToolBox, copy and paste the appropriate command in to your terminal.
cpanm
cpanm Bio::ToolBox
CPAN shell
perl -MCPAN -e shell install Bio::ToolBox
For more information on module installation, please visit the detailed CPAN module installation guide.