Search results for "dist:FAST genetic"
FAST::Bio::Taxon - A node in a represented taxonomy
This is the next generation (for Bioperl) of representing Taxonomy information. Previously all information was managed by a single object called FAST::Bio::Species. This new implementation allows representation of the intermediate nodes not just the ...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
fasxl - translate sequences by a genetic code.
fasxl takes multifasta format DNA or RNA codon sequences or alignments as input, and generates biological translations of those sequences as output. Gapped sequences on input are allowed with the -g, -k or -o options; the gap character "-" is require...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
fascodon - counts codon usage
fascodon takes multifasta format sequence or alignment data as input, and analyzes codon usage and other coding characteristics of the data. By default, fascodon analyzes each sequence record individually, outputting raw codon frequencies appended to...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::OntologyIO::obo - a parser for OBO flat-file format from Gene Ontology Consortium
Needs Graph.pm from CPAN....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Tools::SeqStats - Object holding statistics for one particular sequence
FAST::Bio::Tools::SeqStats is a lightweight object for the calculation of simple statistical and numerical properties of a sequence. By "lightweight" I mean that only "primary" sequences are handled by the object. The calling script needs to create t...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Tools::CodonTable - Codon table object
Codon tables are also called translation tables or genetic codes since that is what they represent. A bit more complete picture of the full complexity of codon usage in various taxonomic groups is presented at the NCBI Genetic Codes Home page. CodonT...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Tools::MySeqStats - Object holding statistics for one particular sequence
FAST::Bio::Tools::SeqStats is a lightweight object for the calculation of simple statistical and numerical properties of a sequence. By "lightweight" I mean that only "primary" sequences are handled by the object. The calling script needs to create t...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Tools::SeqPattern - represent a sequence pattern or motif
FAST::Bio::Tools::SeqPattern module encapsulates generic data and methods for manipulating regular expressions describing nucleic or amino acid sequence patterns (a.k.a, "motifs"). FAST::Bio::Tools::SeqPattern is a concrete class that inherits from F...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC
FAST::Bio::Ontology::OBOEngine - An Ontology Engine for OBO style flat file format from the Gene Ontology Consortium
Needs Graph.pm from CPAN. This module replaces SimpleGOEngine.pm, which is deprecated....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC