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Search results for "distribution:Bio-Chado-Schema genetic"

Bio::Chado::Schema::Result::Genetic - Genotypes and mutant alleles River stage one • 3 direct dependents • 3 total dependents
4 ++

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Genetic::Phendesc River stage one • 3 direct dependents • 3 total dependents
4 ++

A summary of a _set_ of phenotypic statements for any one gcontext made in any one publication....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Genetic::Genotype River stage one • 3 direct dependents • 3 total dependents
4 ++

Genetic context. A genotype is defined by a collection of features, mutations, balancers, deficiencies, haplotype blocks, or engineered constructs....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Genetic::Environment - The environmental component of a phenotype description. River stage one • 3 direct dependents • 3 total dependents
4 ++

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Genetic::Genotypeprop River stage one • 3 direct dependents • 3 total dependents
4 ++

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Genetic::Phenstatement River stage one • 3 direct dependents • 3 total dependents
4 ++

Phenotypes are things like "larval lethal". Phenstatements are things like "dpp-1 is recessive larval lethal". So essentially phenstatement is a linking table expressing the relationship between genotype, environment, and phenotype....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Genetic::FeatureGenotype River stage one • 3 direct dependents • 3 total dependents
4 ++

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Genetic::EnvironmentCvterm River stage one • 3 direct dependents • 3 total dependents
4 ++

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Genetic::PhenotypeComparison River stage one • 3 direct dependents • 3 total dependents
4 ++

Comparison of phenotypes e.g., genotype1/environment1/phenotype1 "non-suppressible" with respect to genotype2/environment2/phenotype2....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Genetic::PhenotypeComparisonCvterm River stage one • 3 direct dependents • 3 total dependents
4 ++

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema - A standard DBIx::Class layer for the Chado database schema. River stage one • 3 direct dependents • 3 total dependents
4 ++

This is a standard object-relational mapping layer for use with the GMOD Chado database schema. This layer is implemented with DBIx::Class, generated with the help of the very fine DBIx::Class::Schema::Loader module. Chado is an open-source modular d...

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Map - Non-sequence maps: genetic, radiation hybrid, cytogenetic, etc River stage one • 3 direct dependents • 3 total dependents
4 ++

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Pub::Pub River stage one • 3 direct dependents • 3 total dependents
4 ++

A documented provenance artefact - publications, documents, personal communication....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Cv::Cvterm River stage one • 3 direct dependents • 3 total dependents
4 ++

A term, class, universal or type within an ontology or controlled vocabulary. This table is also used for relations and properties. cvterms constitute nodes in the graph defined by the collection of cvterms and cvterm_relationships....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Stock::Stock River stage one • 3 direct dependents • 3 total dependents
4 ++

Any stock can be globally identified by the combination of organism, uniquename and stock type. A stock is the physical entities, either living or preserved, held by collections. Stocks belong to a collection; they have IDs, type, organism, descripti...

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Sequence::Feature River stage one • 3 direct dependents • 3 total dependents
4 ++

A feature is a biological sequence or a section of a biological sequence, or a collection of such sections. Examples include genes, exons, transcripts, regulatory regions, polypeptides, protein domains, chromosome sequences, sequence variations, cros...

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Organism::Organism River stage one • 3 direct dependents • 3 total dependents
4 ++

The organismal taxonomic classification. Note that phylogenies are represented using the phylogeny module, and taxonomies can be represented using the cvterm module or the phylogeny module....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Phenotype::Phenotype River stage one • 3 direct dependents • 3 total dependents
4 ++

A phenotypic statement, or a single atomic phenotypic observation, is a controlled sentence describing observable effects of non-wild type function. E.g. Obs=eye, attribute=color, cvalue=red....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::Stock::StockGenotype River stage one • 3 direct dependents • 3 total dependents
4 ++

Simple table linking a stock to a genotype. Features with genotypes can be linked to stocks thru feature_genotype -> genotype -> stock_genotype -> stock....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC

Bio::Chado::Schema::Result::NaturalDiversity::NdExperimentGenotype River stage one • 3 direct dependents • 3 total dependents
4 ++

Linking table: experiments to the genotypes they produce. There is a one-to-one relationship between an experiment and a genotype since each genotype record should point to one experiment. Add a new experiment_id for each genotype record....

RBUELS/Bio-Chado-Schema-0.20000 - 06 Jul 2012 19:06:31 UTC
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