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Bio-SearchIO-hmmer-1.7.3
River stage zero No dependents
++

Changes for version 1.7.3 - 2018-09-24

  • First release after split from bioperl-live.

Documentation

bp_hmmer_to_table
turn HMMER output into tabular format
bp_parse_hmmsearch
parse single/multiple HMMSEARCH results file(s) with different output options

Modules

Bio::Index::Hmmer
indexes HMMER reports and supports retreival based on query
Bio::Search::HSP::HMMERHSP
A HSP object for HMMER results
Bio::Search::HSP::HmmpfamHSP
A parser and HSP object for hmmpfam hsps
Bio::Search::Hit::HMMERHit
A Hit module for HMMER hits
Bio::Search::Hit::HmmpfamHit
A parser and hit object for hmmpfam hits
Bio::Search::Hit::hmmer3Hit
DESCRIPTION of Object
Bio::Search::Result::HMMERResult
A Result object for HMMER results
Bio::Search::Result::HmmpfamResult
A parser and result object for hmmpfam results
Bio::Search::Result::hmmer3Result
DESCRIPTION of Object
Bio::SearchIO::hmmer
A parser for HMMER2 and HMMER3 output (hmmscan, hmmsearch, hmmpfam)
Bio::SearchIO::hmmer2
A parser for HMMER output (hmmpfam, hmmsearch)
Bio::SearchIO::hmmer3
Bio::SearchIO::hmmer_pull
A parser for HMMER output
Bio::Tools::HMMER::Domain
One particular domain hit from HMMER
Bio::Tools::HMMER::Results
Object representing HMMER output results
Bio::Tools::HMMER::Set
Set of identical domains from HMMER matches
Bio::Tools::Hmmpfam
Parser for Hmmpfam program

Other files