Search results for "dist::bioperl"
Dist::Zilla::PluginBundle::BioPerl - Build your distributions like Bioperl does
This is the Dist::Zilla configuration for the BioPerl project. It is roughly equivalent to: [@Filter] -bundle = @Basic ; the basic to maintain and release CPAN distros -remove = Readme ; avoid conflict since we already have a README file [MetaConfig]...
CDRAUG/Dist-Zilla-PluginBundle-BioPerl-0.27 - 14 Sep 2018 15:09:03 UTC - Search in distribution- Pod::Weaver::PluginBundle::BioPerl - Configure your POD like Bioperl does
Bio::Matrix::PhylipDist - A Phylip Distance Matrix object
Simple object for holding Distance Matrices generated by the following Phylip programs: 1) dnadist 2) protdist 3) restdist It currently handles parsing of the matrix without the data output option. 5 Alpha 0.00000 4.23419 3.63330 6.20865 3.45431 Beta...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Tools::RandomDistFunctions - A set of routines useful for generating random data in different distributions
- Bio::Tools::Phylo::Phylip::ProtDist - parser for ProtDist output
- Bio::Root::Utilities - general-purpose utilities
bioseq - Manipulation of FASTA sequences based on BioPerl
bioseq is a command-line utility for common, routine sequence manipulations based on BioPerl modules including Bio::Seq, Bio::SeqIO, Bio::SeqUtils, and Bio::Tools::SeqStats. By default, bioseq assumes that both the input and the output files are in F...
YZHERNAND/Bio-BPWrapper-1.15 - 27 Feb 2024 16:55:31 UTC - Search in distribution- biotree - Tree manipulations based on BioPerl
Bio::DB::HTS - Read files using HTSlib including BAM/CRAM, Tabix and BCF database files
This module provides a Perl interface to the HTSlib library for indexed and unindexed SAM/BAM/CRAM sequence alignment databases. It provides support for retrieving information on individual alignments, read pairs, and alignment coverage information a...
AVULLO/Bio-DB-HTS-3.01 - 23 Apr 2019 13:51:11 UTC - Search in distribution
Bio::Trace::ABIF - Perl extension for reading and parsing ABIF (Applied Biosystems, Inc. Format) files
VITA/Bio-Trace-ABIF-1.06
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02 Nov 2016 11:16:32 UTC
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Module::Build::API - API Reference for Module Authors
I list here some of the most important methods in "Module::Build". Normally you won't need to deal with these methods unless you want to subclass "Module::Build". But since one of the reasons I created this module in the first place was so that subcl...
LEONT/Module-Build-0.4234 - 28 Apr 2023 08:59:31 UTC - Search in distribution
Bio::NEXUS
This User Manual explains the motivation for developing the Bio::NEXUS library, the principles underlying its organization, and its use in developing software for evolutionary informatics. This manual also provides information on how to use two demon...
ARLIN/Bio-NEXUS-0.78 - 10 Feb 2012 13:31:13 UTC - Search in distribution
BioUtil - Bioinformatics Utilities!
SHENWEI/BioUtil-2015.0728
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28 Jul 2015 02:07:44 UTC
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CPAN::Mini - create a minimal mirror of CPAN
CPAN::Mini provides a simple mechanism to build and update a minimal mirror of the CPAN on your local disk. It contains only those files needed to install the newest version of every distribution. Those files are: * 01mailrc.txt.gz * 02packages.detai...
RJBS/CPAN-Mini-1.111017 - 03 Sep 2023 00:44:41 UTC - Search in distribution
Hash::AutoHash::Args - Object-oriented processing of keyword-based argument lists
This class simplifies the handling of keyword argument lists. It replaces Class::AutoClass::Args. See "DIFFERENCES FROM Class::AutoClass::Args" for a discussion of what's new. See Hash::AutoHash::Args::V0 for a subclass which is more compatible with ...
NATG/Hash-AutoHash-Args-1.18 - 06 Oct 2013 00:25:57 UTC - Search in distribution
Bio::Phylo::Manual - High-level user guide
RVOSA/Bio-Phylo-v2.0.1
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30 Oct 2017 19:50:35 UTC
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Robotics::Manual - Manual for Perl Robotics and Robotics::(Devices)
JCLINE/Robotics-0.23
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09 Dec 2009 21:18:41 UTC
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Module::Build::Functions - Module::Install style syntax for Module::Build
This module gives a Module::Install-like syntax to Module::Build, using modules (other than Module::Build itself) that are in the core in 5.006. Most commands from Module::Install are supported, and most parameters to Module::Build's "new" routine ar...
NPLATONOV/Module-Build-Functions-0.04 - 20 Jan 2010 19:18:06 UTC - Search in distribution
Task::MasteringPerl - Modules used in Mastering Perl, 2nd Edition
Task::MasteringPerl installs the modules mentioned in Mastering Perl. Some of them might not install everywhere. * AnyDBM_File * Apache::PerlRun * Apache::Perldoc * Apache::Pod * App::Smbxfer * AutoLoader * AutoSplit * B::Deobfuscate * B::Deparse * B...
BDFOY/Task-MasteringPerl-1.006 - 23 Jan 2021 20:59:44 UTC - Search in distribution
Bio::CUA::CodonTable - A package processing genetic codon table
FORTUNE/Bio-CUA-1.04
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12 Jul 2015 19:52:07 UTC
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Bio::SeqAlignment - Aligning (and pseudo aligning) biological sequences
The Bio::SeqAlignment distribution provides a wrapper over collection of tools, static and dynamic libraries for (pseudo-)aligning biological. sequences. The overarching aim is to provide a Perl ecosystem that can be used to build components that can...
CHRISARG/Bio-SeqAlignment-0.02 - 24 Mar 2024 02:58:28 UTC - Search in distribution
Benchmark::DKbench - Perl CPU Benchmark
A Perl benchmark suite for general compute, created to evaluate the comparative performance of systems when running computationally intensive Perl (both pure Perl and C/XS) workloads. It is a good overall indicator for generic CPU performance in real...
DKECHAG/Benchmark-DKbench-2.6 - 25 Apr 2024 22:42:08 UTC - Search in distribution
Bio::GenBankParser - Parse::RecDescent parser for a GenBank record
KCLARK/Bio-GenBankParser-0.05
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23 Jun 2010 17:00:02 UTC
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Bio::Coordinate::Graph - Finds shortest path between nodes in a graph.
This class calculates the shortest path between input and output coordinate systems in a graph that defines the relationships between them. This class is primarely designed to analyze gene-related coordinate systems. See Bio::Coordinate::GeneMapper. ...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC - Search in distribution