Search results for "Bio::Search::Hit::Fasta"
Bio::Search::Hit::Fasta - Hit object specific for Fasta-generated hits
Bio::Search::Hit::HitI objects are data structures that contain information about specific hits obtained during a library search. Some information will be algorithm-specific, but others will be generally defined, such as the ability to obtain alignme...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::Search::Hit::PullHitI - Bio::Search::Hit::HitI interface for pull parsers.
- Bio::SearchIO - Driver for parsing Sequence Database Searches (BLAST, FASTA, ...)
- Bio::Search::Hit::GenericHit - A generic implementation of the Bio::Search::Hit::HitI interface
- 11 more results from BioPerl »
Bio::ORA - Olfactory Receptor family Assigner (ORA) [bioperl module]
Bio::ORA is a featherweight object for identifying mammalian olfactory receptor genes. The sequences should not be longer than 40kb. The returned array include location, sequence and statistic for the putative olfactory receptor gene. Fully functiona...
CERATITES/ora-2.0 - 14 Jun 2016 15:58:05 UTC - Search in distribution
Bio::Grep - Perl extension for searching in DNA and Protein sequences
Bio-Grep is a collection of Perl modules for searching in DNA and Protein sequences. It supports different back-ends, most importantly some (enhanced) suffix array implementations. Currently, there is no suffix array tool that works in all scenarios ...
LIMAONE/Bio-Grep-v0.10.6 - 12 Nov 2009 20:01:33 UTC - Search in distribution- Bio::Grep::Backend::Agrep - Agrep back-end
- Bio::Grep::Backend::BackendI - Superclass for all back-ends
Bio::DB::GFF - Storage and retrieval of sequence annotation data
Bio::DB::GFF provides fast indexed access to a sequence annotation database. It supports multiple database types (ACeDB, relational), and multiple schemas through a system of adaptors and aggregators. The following operations are supported by this mo...
CJFIELDS/Bio-DB-GFF-1.7.4 - 08 Jan 2020 20:41:58 UTC - Search in distribution
FortyTwo::Manual - User Guide for Forty-Two
DBAURAIN/Bio-MUST-Apps-FortyTwo-0.213470
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13 Dec 2021 23:13:33 UTC
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Bio::Index::Hmmer - indexes HMMER reports and supports retreival based on query
This object allows one to build an index on a HMMER file (or files) and provide quick access to the HMMER report for that accession. For best results 'use strict'. You can also set or customize the unique key used to retrieve by writing your own func...
CJFIELDS/Bio-SearchIO-hmmer-1.7.3 - 25 Sep 2018 00:26:52 UTC - Search in distribution
Physeter::Manual - User Guide for Physeter
DBAURAIN/Bio-MUST-Apps-Physeter-0.213470
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13 Dec 2021 11:04:21 UTC
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FAST::Bio::SearchIO - Driver for parsing Sequence Database Searches (BLAST, FASTA, ...)
This is a driver for instantiating a parser for report files from sequence database searches. This object serves as a wrapper for the format parsers in FAST::Bio::SearchIO::* - you should not need to ever use those format parsers directly. (For peopl...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Search::Hit::PullHitI - FAST::Bio::Search::Hit::HitI interface for pull parsers.
- FAST::Bio::Search::Hit::HitI - Interface for a hit in a similarity search result
- FAST::Bio::SearchIO::fasta - A SearchIO parser for FASTA results
- 6 more results from FAST »
Bio::Tools::Run::RemoteBlast - Object for remote execution of the NCBI Blast via HTTP
Class for remote execution of the NCBI Blast via HTTP. For a description of the many CGI parameters see: https://www.ncbi.nlm.nih.gov/BLAST/Doc/urlapi.html Various additional options and input formats are available....
CJFIELDS/Bio-Tools-Run-RemoteBlast-1.7.3 - 25 Sep 2018 04:48:13 UTC - Search in distribution
Bio::GMOD::Blast::Graph - display a graphical summary of a BLAST report
This package provides methods for graphically displaying a BLAST search report....
RBUELS/Bio-GMOD-Blast-Graph-0.06 - 10 Aug 2011 21:10:47 UTC - Search in distribution
Bio::DOOP::Util::Run::Fuzznuc - Fuzznuc module
This module is a wrapper for the EMBOSS (http://emboss.sourceforge.net) program fuzznuc. You can search for patterns in the promoter sequences....
RAZZOR/Bio-DOOP-DOOP-1.04 - 17 Aug 2009 12:59:38 UTC - Search in distribution
Bio::Tools::Run::Alignment::StandAloneFasta - Object for the local execution of the Fasta3 programs ((t)fasta3, (t)fastx3, (t)fasty3 ssearch3)
This wrapper works with version 3 of the FASTA program package (see W. R. Pearson and D. J. Lipman (1988), "Improved Tools for Biological Sequence Analysis", PNAS 85:2444-2448 (Pearson and Lipman, 1988); W. R. Pearson (1996) "Effective protein sequen...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution