Search results for "HEIKKI"
Heikki Lehväslaiho (HEIKKI)
Heikki Hannikainen (HESSU)
Heikki Mehtänen (HEJKI)
Net::SSLeay - Perl bindings for OpenSSL and LibreSSL
This module provides Perl bindings for libssl (an SSL/TLS API) and libcrypto (a cryptography API)....
CHRISN/Net-SSLeay-1.94 - 08 Jan 2024 01:22:27 UTC - Search in distribution- Net::SSLeay::Handle - Perl module that lets SSL (HTTPS) sockets be handled as standard file handles.
SDL - Simple DirectMedia Layer for Perl
SDL_perl is a package of Perl modules that provide both functional and object oriented interfaces to the Simple DirectMedia Layer for Perl 5. This package takes some liberties with the SDL API, and attempts to adhere to the spirit of both the SDL and...
FROGGS/SDL-2.548 - 19 May 2018 10:58:08 UTC - Search in distribution
spipe - simple pipeline running interface
Spipe is a control script for running simple pipelines read from configuration files written in YAML language. For internal details of the pipeline, check the documentation for the perl module App::Pipeline::Simple....
HEIKKI/App-Pipeline-Simple-0.9.1 - 22 Oct 2012 06:02:37 UTC - Search in distribution- App::Pipeline::Simple - Simple workflow manager
HTTP::Async - process multiple HTTP requests in parallel without blocking.
Although using the conventional "LWP::UserAgent" is fast and easy it does have some drawbacks - the code execution blocks until the request has been completed and it is only possible to process one request at a time. "HTTP::Async" attempts to address...
KAORU/HTTP-Async-0.33 - 14 Jan 2017 15:44:53 UTC - Search in distribution
configcmd - Store command line options in a file for future use
configcmd takes any POSIX command line with GNU extensions and stores it in a configuration file that can be later read into a program and passed to the sub-program. This simplifies the input for command line scripts that are repeatedly run in differ...
HEIKKI/Config-Cmd-0.002 - 01 Jan 2013 09:21:18 UTC - Search in distribution- Config::Cmd - Command line to config file two way interface
Bio::SeqUtils - Additional methods for PrimarySeq objects
This class is a holder of methods that work on Bio::PrimarySeqI- compliant sequence objects, e.g. Bio::PrimarySeq and Bio::Seq. These methods are not part of the Bio::PrimarySeqI interface and should in general not be essential to the primary functio...
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::SimpleAlign - Multiple alignments held as a set of sequences
- Bio::RangeI - Range interface
- Bio::Range - Pure perl RangeI implementation
- 29 more results from BioPerl »
bp_flanks - finding flanking sequences for a variant in a sequence position
This script allows you to extract a subsequence around a region of interest from an existing sequence. The output if fasta formatted sequence entry where the header line contains additional information about the location....
CJFIELDS/Bio-Variation-1.7.5 - 06 Jan 2020 19:59:16 UTC - Search in distribution- Bio::Variation::SeqDiff - Container class for mutation/variant descriptions
- Bio::Variation::IO - Handler for sequence variation IO Formats
- Bio::Variation::VariantI - Sequence Change SeqFeature abstract class
- 7 more results from Bio-Variation »
FAST::Bio::SimpleAlign - Multiple alignments held as a set of sequences
SimpleAlign is an object that handles a multiple sequence alignment (MSA). It is very permissive of types (it does not insist on sequences being all same length, for example). Think of it as a set of sequences with a whole series of built-in manipula...
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::Tools::SeqStats - Object holding statistics for one particular sequence
- FAST::Bio::SeqUtils - Additional methods for PrimarySeq objects
- FAST::Bio::RangeI - Range interface
- 19 more results from FAST »
Ham::APRS::FAP - Finnish APRS Parser (Fabulous APRS Parser)
Unless a debugging mode is enabled, all errors and warnings are reported through the API (as opposed to printing on STDERR or STDOUT), so that they can be reported nicely on the user interface of an application. This parser is not known to crash on i...
HESSU/Ham-APRS-FAP-1.21 - 24 Mar 2017 06:51:33 UTC - Search in distribution- Ham::APRS::IS - An APRS-IS client module
Bio::DB::SwissProt - Database object interface to SwissProt retrieval
SwissProt is a curated database of proteins managed by the Swiss Bioinformatics Institute. Additional tools for parsing and manipulating swissprot files can be found at ftp://ftp.ebi.ac.uk/pub/software/swissprot/Swissknife/. Allows the dynamic retrie...
CJFIELDS/Bio-DB-SwissProt-1.7.4 - 07 Dec 2019 22:09:00 UTC - Search in distribution
AMPR::Rip44 - A naive custom RIPv2 daemon
CJCOLLIER/AMPR-Rip44-0.03
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19 Jan 2012 19:09:10 UTC
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Date::Parser - Simple date parsing
Really simple date parsing factory. Uses I18N::Langinfo for localized day/month names and abbreviations....
HEJKI/Date-Parser-0.4 - 26 Apr 2011 11:31:05 UTC - Search in distribution- Date::Parser::Date - Simple date object
Bio::DB::EMBL - Database object interface for EMBL entry retrieval
Allows the dynamic retrieval of sequence objects Bio::Seq from the EMBL database using the dbfetch script at EBI: <http://www.ebi.ac.uk/Tools/dbfetch/dbfetch>. In order to make changes transparent we have host type (currently only ebi) and location (...
CJFIELDS/Bio-DB-EMBL-1.7.4 - 04 Mar 2019 05:02:40 UTC - Search in distribution
Bio::Tools::Run::Phylo::Phyml - Wrapper for rapid reconstruction of phylogenies using Phyml
This is a wrapper for running the phyml application by Stephane Guindon and Olivier Gascuel. You can download it from: http://atgc.lirmm.fr/phyml/ Installing After downloading, you need to rename a the copy of the program that runs under your operati...
CJFIELDS/BioPerl-Run-1.007003 - 08 Feb 2019 19:55:33 UTC - Search in distribution- Bio::Factory::EMBOSS - EMBOSS application factory class
- Bio::Tools::Run::EMBOSSacd - class for EMBOSS Application qualifiers
- Bio::Tools::Run::EMBOSSApplication - class for EMBOSS Applications
Bio::Biblio::Ref - representation of a bibliographic reference
A storage object for a general bibliographic reference (a citation). See its place in the class hierarchy in http://www.ebi.ac.uk/~senger/openbqs/images/bibobjects_perl.gif Attributes The following attributes are specific to this class, and they are ...
CDRAUG/Bio-Biblio-1.70 - 24 Mar 2013 00:19:52 UTC - Search in distribution- Bio::Biblio::Book - Representation of a book
- Bio::DB::Biblio::biofetch - a BioFetch-based access to a bibliographic citation retrieval
- Bio::Biblio::Patent - representation of a patent
- 17 more results from Bio-Biblio »
Bio::Coordinate::GeneMapper - Transformations between gene related coordinate systems.
Bio::Coordinate::GeneMapper is a module for simplifying the mappings of coodinate locations between various gene related locations in human genetics. It also adds a special human genetics twist to coordinate systems by making it possible to disable t...
CJFIELDS/Bio-Coordinate-1.007001 - 15 Dec 2016 05:03:14 UTC - Search in distribution- Bio::Coordinate::Graph - Finds shortest path between nodes in a graph.
- Bio::Coordinate - Modules for working with biological coordinates
- Bio::Coordinate::Pair - Continuous match between two coordinate sets.
- 9 more results from Bio-Coordinate »
Bio::DB::RefSeq - Database object interface for RefSeq retrieval
Allows the dynamic retrieval of sequence objects Bio::Seq from the RefSeq nucleotide database using the dbfetch script at EBI: http://www.ebi.ac.uk/Tools/dbfetch/dbfetch At this time the module specifically retrieves nucleotide sequences only. In ord...
CJFIELDS/Bio-DB-RefSeq-1.7.4 - 07 Dec 2019 22:10:26 UTC - Search in distribution
Ham::APRS::DeviceID - APRS device identifier
Unless a debugging mode is enabled, all errors and warnings are reported through the API (as opposed to printing on STDERR or STDOUT), so that they can be reported nicely on the user interface of an application. This module requires a reasonably rece...
HESSU/Ham-APRS-DeviceID-2.02 - 20 Apr 2015 20:39:42 UTC - Search in distribution
Bio::Graphics::ConfiguratorI - A sectioned map of configuration options (a map of maps), with a default section. Intended to augment existing tag-gtvalue semantics (ie. of Bio::AnnotationCollectionI) for object-representation information (eg. foreground color), and for general interface preferences (eg. image width in gbrowse).
This object contains various configuration parameters. It is divided up into sections and tags. This is essentially a multi-level map (section->tag->value). There is also the concept of a default section which is referenced when no section is passed ...
CJFIELDS/Bio-Graphics-2.40 - 16 Dec 2016 04:50:36 UTC - Search in distribution
Text::Levenshtein::BV - Bit Vector (BV) implementation of the Levenshtein Algorithm
CONSTRUCTOR new() Creates a new object which maintains internal storage areas for the SES computation. Use one of these per concurrent SES() call. METHODS SES(\@a,\@b) Finds a Shortest Edit Script (SES), taking two arrayrefs as method arguments. It r...
WOLLMERS/Text-Levenshtein-BV-0.08 - 21 May 2022 14:20:25 UTC - Search in distribution