Search results for "taxonomy"
Parse::Taxonomy - Validate hierarchical data stored in CSV format
This module is the base class for the Parse-Taxonomy extension to the Perl 5 programming language. You will not instantiate objects of this class; rather, you will instantiate objects of subclasses, of which Parse::Taxonomy::MaterializedPath and Pars...
JKEENAN/Parse-Taxonomy-0.24 - 09 Apr 2016 12:01:44 UTC - Search in distribution- Parse::Taxonomy::Cookbook - cookbook for Parse-Taxonomy
- Parse::Taxonomy::Auxiliary - Utility subroutines for Parse::Taxonomy
- Parse::Taxonomy::AdjacentList - Extract a taxonomy from a hierarchy inside a CSV file
- 1 more result from Parse-Taxonomy »
Bio::DB::Taxonomy - Access to a taxonomy database
This is a front end module for access to a taxonomy database....
CJFIELDS/BioPerl-1.7.8 - 03 Feb 2021 05:15:14 UTC - Search in distribution- Bio::DB::Taxonomy::list - An implementation of Bio::DB::Taxonomy that accepts lists of words to build a database
- Bio::DB::Taxonomy::silva - Use the Silva taxonomy
- Bio::DB::Taxonomy::flatfile - Use the NCBI taxonomy from local indexed flat files
- 6 more results from BioPerl »
Bio::LITE::Taxonomy - Lightweight and efficient taxonomic tree manager
This module provides easy and efficient access to different taxonomies (NCBI and RDP) with minimal dependencies and without intermediate databases. This module should be used through specific taxonomic interfaces (e.g. Bio::LITE::Taxonomy::NCBI or Bi...
MOTIF/Bio-LITE-Taxonomy-0.07 - 24 May 2011 11:20:38 UTC - Search in distribution
TM::Index::Taxonomy - Topic Maps, Indexing support (match layer)
This index can be attached to a map if querying it for subclass/superclass and/or instances/classes is intensive. The package inherits most of its functionality from TM::Index....
DRRHO/TM-1.56 - 08 Nov 2010 06:58:01 UTC - Search in distribution- TM - Topic Maps, Base Class
- TM::Overview - Topic Maps, Overview
- TM::Tree - Topic Maps, trait for induced tree retrieval
Data::Taxonomy::Tags - Represents a set of tags for any item
Data::Taxonomy::Tags will basically take care of managing tags for an item easier. You provide it with a string of tags and it'll allow you to call methods to get all the tags and categories as well as add and delete tags from the list. Methods new($...
TSIBLEY/Data-Taxonomy-Tags-0.05 - 26 Jun 2005 20:15:23 UTC - Search in distribution- Data::Taxonomy::Tags::Tag - Represents a single tag
FAST::Bio::DB::Taxonomy - Access to a taxonomy database
This is a front end module for access to a taxonomy database....
DHARD/FAST-1.06 - 21 Apr 2015 08:04:25 UTC - Search in distribution- FAST::Bio::DB::Taxonomy::list - An implementation of FAST::Bio::DB::Taxonomy that accepts lists of words to build a database
- FAST::Bio::DB::Taxonomy::entrez - Taxonomy Entrez driver
- FAST::Bio::DB::Taxonomy::flatfile - An implementation of FAST::Bio::DB::Taxonomy which uses local flat files
- 5 more results from FAST »
Bio::LITE::Taxonomy::RDP - Lightweight and efficient RDP taxonomic manager
This module provides easy and efficient access to the RDP taxonomy with minimal dependencies and without intermediary databases. This module is not part of the Bioperl bundle....
MOTIF/Bio-LITE-Taxonomy-RDP-0.03 - 24 May 2011 11:21:02 UTC - Search in distribution
Bio::DB::Taxonomy::entrez - Taxonomy Entrez driver
A driver for querying NCBI Entrez Taxonomy database....
CJFIELDS/Bio-DB-NCBIHelper-1.7.8 - 15 Dec 2023 04:25:18 UTC - Search in distribution- bp_query_entrez_taxa - query Entrez taxonomy database and print out information
Bio::DB::Taxonomy::sqlite - SQLite-based implementation of Bio::DB::Taxonomy::flatfile
This is an implementation of Bio::DB::Taxonomy which stores and accesses the NCBI taxonomy using a simple SQLite3 database stored locally on disk. With this implementation, one can do the same basic searches as with the 'flatfile' database. A test lo...
CJFIELDS/Bio-DB-Taxonomy-sqlite-1.7.3 - 02 Mar 2020 05:53:54 UTC - Search in distribution
Bio::LITE::Taxonomy::NCBI - Lightweight and efficient NCBI taxonomic manager
This module provides easy and efficient access to the NCBI taxonomy with minimal dependencies and without intermediary databases. This module is not part of the Bioperl bundle. For bioperl alternatives see the "SEE ALSO" section of this document....
MOTIF/Bio-LITE-Taxonomy-NCBI-0.1 - 20 May 2015 08:51:23 UTC - Search in distribution
Bio::MUST::Core::Taxonomy - NCBI Taxonomy one-stop shop
# TODO...
DBAURAIN/Bio-MUST-Core-0.240390 - 08 Feb 2024 21:02:36 UTC - Search in distribution- Bio::MUST::Core::Taxonomy::Filter - Helper class for filtering seqs according to taxonomy
- Bio::MUST::Core::Taxonomy::Labeler - Helper class for simple labeler based on taxonomy
- Bio::MUST::Core::Taxonomy::Category - Helper class for multiple-criterion classifier based on taxonomy
- 15 more results from Bio-MUST-Core »
Bio::Taxonomy::GlobalNames - Perlish OO bindings to the Global Names Resolver API
Bio::Taxonomy::GlobalNames provides Perl objects and functions that interface with the Global Names Resolver web service. Using a REST client, input is sent to the service, whereas results are internally converted from JSON format to nested objects a...
DGKONTOP/Bio-Taxonomy-GlobalNames-0.07 - 22 Dec 2014 22:34:39 UTC - Search in distribution
lib/WebService/Walmart/Taxonomy.pm
BRANDON/WebService-Walmart-0.01
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15 Feb 2016 23:02:30 UTC
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lib/XBRL/JPFR/Taxonomy.pm
This module is part of the XBRL::JPFR modules group and is intended for use with XBRL::JPFR. new my $taxonomy = XBRL::JPFR::Taxonomy->new( { main_schema => <schema object here> })...
YONJOUHAN/XBRL-JPFR-0.07 - 08 Jan 2018 04:26:58 UTC - Search in distribution
Bio::LITE::Taxonomy::NCBI::Gi2taxid - Mappings of NCBI GI's to Taxids fast and with very low memory footprint.
The NCBI site offers a file to map gene and protein sequences (GIs) with their corresponding taxon of origin (Taxids). If you want to use this information inside a Perl script you will find that (given the high amount of sequences available) it is fa...
MOTIF/Bio-LITE-Taxonomy-NCBI-Gi2taxid-0.13 - 03 Dec 2014 12:08:40 UTC - Search in distribution
Throwable::Factory - lightweight Moo-based exception class factory
"Throwable::Factory" is an Exception::Class-like exception factory using MooX::Struct. All exception classes built using "Throwable::Factory" are MooX::Struct structs, but will automatically include a "message" attribute, will compose the Throwable a...
TOBYINK/Throwable-Factory-0.007 - 10 Sep 2014 21:57:52 UTC - Search in distribution
Bio::Community::TaxonomyUtils - Functions for manipulating taxonomic lineages
This module implements functions to manipulate taxonomic lineages, as arrayref of taxon names or taxon objects....
FANGLY/Bio-Community-0.001008 - 08 Jan 2016 20:06:45 UTC - Search in distribution- bc_add_taxonomy - Add a taxonomic lineage to community members
- bc_summarize - Summarize community composition
- Bio::Community::Meta - A metacommunity, or group of communities
- 4 more results from Bio-Community »
GO::Parsers::ncbi_taxonomy_parser
See <ftp://ftp.ebi.ac.uk/pub/databases/taxonomy/taxonomy.dat>...
CMUNGALL/go-perl-0.15 - 12 Jun 2013 16:22:41 UTC - Search in distribution
PGN - Portable Game Notation for Chess
This is the Portable Game Notation Specification and Implementation Guide, as revised on 12th March 1994....
GDR/Games-Chess-0.003 - 07 Jun 1999 12:42:08 UTC - Search in distribution
UTILS - [documentation] WordNet::Similarity supporting utilities
The '/utils' directory of the package contains a few support Perl programs, that use the WordNet::Similarity modules or generate data files for it. As part of the standard installation these are installed into the system directories (such as /usr/bin...
TPEDERSE/WordNet-Similarity-2.07 - 04 Oct 2015 16:19:03 UTC - Search in distribution- TODO - Todo list for WordNet::Similarity
- CHANGES - Revision history for WordNet::Similarity
- CONFIG - [documentation] Description of all configuration options for measures
- 6 more results from WordNet-Similarity »